Publications

2017

Stewart, JE*, Ross-Davis, AL*, RN Graҫa, AC Alfenas, TL Peever, JW Hanna, E Pitman, JY Uchida, RD Hauff, CY Kadooka, M-S Kim, PG Cannon, S Namba, N Minato, S Simeto, CA Pérez, MB Rayamajhi, M Morán, DJ Lodge, M Arguedas, R Medel-Ortiz, MA López-Ramirez, P Tennant, M Glen, A McTaggart, NB Klopfenstein. 2017. Insights into the genetic diversity of Puccinia psidii in the Americas and Hawaii: Global implications for invasive threat assessments. Forest Pathology. In press

Ritter, S.M., Hoffman, C.M., Stewart, JE, Zimmerman, T. 2017. The influence of prescribed crown fire on Lodgepole Pine Dwarf Mistletoe (Arceuthobium americanum) populations 33 years post-fire. Forest Pathology, In press.

Sitz, R., Snelling, J., Ibarra Caballero, J., Zerillo, M., Alexander, K., Tisserat, N., Cranshaw, W., Stewart, JE. 2017. Drippy blight disease of red oaks in Colorado caused by llokermes sp. and Lonsdalea quercina subsp. quercina. Arboriculture and Urban Forestry, In press.

Jongbum, J, Ki-Tae K, H-J Song, G-W Lee, K Cheong, H Kim, G Choi, Y-H Lee, JE Stewart, NB Klopfenstein, M-S Kim. 2017. Draft Genome Sequence of the Fungus Associated with Oak-Wilt Mortality in South Korea, Raffaelea quercus-mongolicae KACC44405, Genome Announcements. https://doi.org/10.1128/genomeA.00797-17

Ritter S, Hoffman C, Ex S, Stewart, JE. 2017. Impacts of lodgepole pine dwarf mistletoe (Arceuthobium americanum) infestation on stand structure and fuel load in lodgepole pine dominated forests in central Colorado. Botany. 95: 307-231.

Klopfenstein NB, J.E. Stewart, Y Ota, JW Hanna, BA Richardson, AL Ross-Davis, RD Elías-Román, K Korhonen, N Keča, E Iturritxa, D Alvarado-Rosales, H Solheim, NJ Brazee, P Łakomy, MR Cleary, E Hasegawa, T Kikuchi, F Garza-Ocañas, P Tsopelas, D Rigling, S Prospero, T Tsykun, JA Bérubé, FOP Stefani, S Jafarpour, V Antonín, M Tomšovský, GI McDonald, S Woodward, M-S Kim. 2017. Insights into the phylogeny of Northern Hemisphere Armillaria: split-network and Bayesian analyses of translation elongation factor 1-α gene sequences. Mycologia. In press.

Sitz, R.A., Luna, E.K., Ibarra Caballero, J., Tisserat, N.A., Cranshaw, W.S., Stewart, J.E. 2017. Virulence of genetically distinct Geosmithia morbida isolates to black walnut and their response to co-inoculation with Fusarium solani. Plant Disease. 101: 116-120.

2016

Stewart, J.E., K. Otto, Cline, G.A., Dumroese, R.K., Klopfenstein, N.B., Kim, M.-S. 2016. First Report of Fusarium proliferatrum causing Fusarium root disease on sugar pine (Pinus lambertiana) in a forest container nursery in California. Plant Disease. 100: 12.

Kolb, T.E., Fettig, C.J., Bentz, B.J., Stewart, J.E., Weed, A.S., Hicks, J.A., Aryes, M.P. 2016. Observed and anticipated impacts of drought on forests insects and diseases in the United States. Forest Ecology and Management.

Glenn, A.T., Davis, B., Minglu, G., Gold, S.E., Mitchell, T., Proctor, R., Stewart, J.E., Snook, M. 2016. Two horizontally transferred xenobiotic resistance gene clusters associate with detoxification of benzoxazolinones by Fusarium species. PlosOne.

2015

Stewart, J.E., Brooks# K., Brannen, P.M, Cline, W.O., Brewer, M.T. 2015. Extreme diversity found in the emerging pathogen of blueberry Exobasidium maculosum. PlosOne.

Stewart, J.E., Turner, A.N., Brewer, MT. 2015. Evolutionary history and variation in host range in the Didymella bryoniae/Stagonosporopsis caricae species complex pathogenic to curcurbits and papaya. Fungal Biology. 119: 370-182.

Huang, F., Fu, Y., Nie, D., Stewart, J.E., Peever, T.L., Li, H. 2015. Phylogeographic analysis of Alternaria alternata causing brown spot of tangerines in China reveals previously unknown diversity. Fungal Biology. 119: 320-330.

2014

Stewart, J.E., Kroese, D., Tabima, J.F., Larsen, M.M., Press, C.M., Zasada, I., Grünwald, N.J. 2014. Phytophthora rubi isolates collected from raspberry (Rubus idaeus) in the Western United States show no differentiation in pathogenicity, fungicide resistance or genetic structure. Plant Disease. 98: 1702-1706.

Schoebel, C.N., Stewart, J.E., Grünwald, N.J., Prospero, S. 2014. Population history and pathways of spread of the plant pathogen Phytophthora plurivora. PlosOne. e85368.

Stewart, J.E., Timmer, L.M., Lawrence, C.B., Pryor, B.M., Peever, T.L. 2014. Discord between morphological and phylogenetic species boundaries: incomplete lineage sorting and recombination results in fuzzy species boundaries in an asexual fungal pathogen BMC Evolutionary Biology. 1: 38.

2013

Stewart, J.E., Thomas# K.A., Lawrence, C.B., Pryor, B.M., Peever, T.L., 2013. Signatures of recombination in clonal lineages of the citrus brown spot pathogen, Alternaria alternata. Phytopathology. 103: 741-749.

Stewart, J.E., Andrew, M., Bao, X., Chilvers, M.I., Carris, L. M. Peever, T.L., 2013. Development and utility of sequence characterized amplified genomic regions for lower-level fungal systematics: Proof of principle using Alternaria, Ascochyta and Tilletia. Mycologia. doi: 10.3852/12-287.

Ross-Davis*, A.L., Stewart*, J.E., Hanna, J.W., Kim, M.-S., Cronn, R., Rai, H., Richardson, B.R. McDonald, G.I., and Klopfenstein, N.B.. 2013. Transcriptome characterization of an Armillaria root disease pathogen reveals candidate pathogenicity-related genes. Forest Pathology. doi: 10.1111/efp.12056

2012-2003

Kim, M.-S., Stewart, J.E., Dumroese, R.K., and Klopfenstein, N.B. 2012. Occurrence of Fusarium commune in forest nurseries. Journal of Phytopathology. 160: 112-114.

Stewart, J.E., Abdo, Z., Dumroese, R.K., Klopfenstein, N.B., Kim, M.-S. 2012. Pathogenicity of Fusarium oxysporum and F. commune to Douglas-fir (Pseudotsuga menziesii) seedlings. Forest Pathology. DOI: 10.1111/j.1439-0329.2011.00746.x.

Humann, J.L., Wildung, M., Cheng, C-H, Lee, T., Stewart, J.E., Drew, J.C., Triplett, E.W., Main, D., B.K. Schroeder. 2011. Complete genome of the onion pathogen Enterobacter cloacae EcWSU1. Standards in Genomic Sciences. 5:3 ISSN 1944-3277 doi:10.4056/sigs.2174950.

Stewart*, J.E., Kawabe*, M., Abdo, Z., Arie, T., Peever T.L. 2011. Contrasting codon usage patterns and purifying selection at the mating locus in putatively asexual Alternaria fungal species. PLoS One. 6: e20083.

Akamastu, H.O., Chilvers, M.I., Stewart, J.E., Peever, T.L. 2010. Identification and function of a polyketide synthase gene responsible for 1,8-dihydrozynaphtahlene-melanin pigment biosynthesis in Ascochyta rabiei. Current Genetics. 56: 349-360.

Chilvers, M.I., Rogers, J.D., Dugan, F.M., Stewart, J.E., Chen W., Peever, T.L. 2009. Didymella pisi sp. nov., the teleomorph of Ascochyta pisi. Mycological Research. 113: 391-400.

Stewart, J.E., M.-S. Kim, R.L. James, R.K. Dumroese, N. B. Klopfenstein. 2006. Molecular characterization of Fusarium oxysporum and Fusarium commune from a conifer nursery. Phytopathology. 96.1124-1133.

McDonald, G.I., Tanimoto, P.D., Rice, T.M., Stewart, J.E., Tonn, J.R., Hall, D.E., Zambino, P.J., Klopfenstein, N.B., Kim, M.-S. 2005. Root Disease Analyzer – Armillaria Response Tool (ART). In: Sutherland, E.K., Black, A.E., eds. Science Synthesis and Integration. Environmental Consequences Fact Sheet: 13. Research Note RMRS-RN-23-13-WWW. Fort Collins, CO: U.S. Dept. of Agriculture, Forest Service, Rocky Mountain Research Station.

Rippy, R. C.; Stewart, J.E.; Zambino, P.J.; Klopfenstein, N. B.; Tirocke, J. M.; Kim, M.-S.; Thies, W. G. 2005. Root diseases in coniferous forests of the Inland West: potential implications of fuels treatments. Gen. Tech. Rep. RMRS-GTR-141. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 32 p.

Stewart, J.E., S. Halik, and D.R. Bergdahl. 2004. Viability of Sirococcus clavigignenti  juglandacearum conidia on exoskeletons of three coleopteran species.  Plant Dis. 88:1085-1091.

Stewart, J.E., S. Halik, and D.R. Bergdahl 2003. Viability of conidiospores of the butternut canker fungus on potential beetle vectors. Northern Nut Growers Association Annual Report. 94:1-8.

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